PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g02000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 248aa    MW: 27372.5 Da    PI: 4.9671
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g02000genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.4e-0594116123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ykC++Cg+ Fs    L  H+r+H
  CA01g02000  94 YKCSICGEEFSLGQALGGHMRKH 116
                 9*********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.19E-947116No hitNo description
PfamPF139123.0E-94871IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.7834875IPR007087Zinc finger, C2H2
SMARTSM003550.414870IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805070IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.4E-592119IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139127.2E-1094119IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.28194121IPR007087Zinc finger, C2H2
SMARTSM003550.01494116IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028096116IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MSTPSTTTDM TLTLKRSITE EESVEKFAMA NCVDIMKRNE LSGRHELFKC KTCEKQFDSF  60
QALGGHRTSH KNKKNKLMAT STNNDSLPVK PKKYKCSICG EEFSLGQALG GHMRKHRDEL  120
NQSKQNKIKK FEESESGECA LKEESESGEC ALEESSKSGE CALKEESESG ECALEESSKS  180
VECALEESSK SGECALKEGS KSGECAEAFH DKEDLGDTKR TLFLDLNYTP YENELMTGVS  240
PFSFGCN*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016552714.11e-178PREDICTED: zinc finger protein 525-like
TrEMBLM1AF563e-52M1AF56_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000214561e-51(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59820.12e-25C2H2 family protein